PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G068400.3

Common Name

B456_009G068400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 312aa MW: 35828.4 Da PI: 5.0145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G068400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	68	92	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gorai.009G068400.3 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.86E-6	3	36	No hit	No description
SMART	SM00355	54	4	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.04E-6	67	104	No hit	No description
PROSITE profile	PS50157	9.743	68	97	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.1E-5	68	92	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.19	68	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.14E-7	168	241	No hit	No description
Pfam	PF12756	2.8E-26	182	283	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	33	231	258	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC 180 CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVKRD FMCLYCNERC 240 HPFASLEAVR KHMAAKGHCK VHYGDGDEEE EAELEEFYDY SSRYASHFII LYIYIKLSLL 300 TILFRLKQLR G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5apo_y	1e-16	182	286	164	265	CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443253.1	0.0	PREDICTED: zinc finger protein 622-like
Refseq	XP_012443252.1	0.0	PREDICTED: zinc finger protein 622-like
Swissprot	Q8H1G5	1e-134	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A0D2QAI1	0.0	A0A0D2QAI1_G
STRING	GLYMA17G29490.1	1e-143	(Glycine max)

Link Out ? help Back to Top
Phytozome	Gorai.009G068400.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]