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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G068400.3 | ||||||||
Common Name | B456_009G068400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 35828.4 Da PI: 5.0145 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 68 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Gorai.009G068400.3 68 YSCGVCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-6 | 3 | 36 | No hit | No description |
SMART | SM00355 | 54 | 4 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.04E-6 | 67 | 104 | No hit | No description |
PROSITE profile | PS50157 | 9.743 | 68 | 97 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.1E-5 | 68 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.19 | 68 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.14E-7 | 168 | 241 | No hit | No description |
Pfam | PF12756 | 2.8E-26 | 182 | 283 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 33 | 231 | 258 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK 60 QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK 120 PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC 180 CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVKRD FMCLYCNERC 240 HPFASLEAVR KHMAAKGHCK VHYGDGDEEE EAELEEFYDY SSRYASHFII LYIYIKLSLL 300 TILFRLKQLR G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5apo_y | 1e-16 | 182 | 286 | 164 | 265 | CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012443253.1 | 0.0 | PREDICTED: zinc finger protein 622-like | ||||
Refseq | XP_012443252.1 | 0.0 | PREDICTED: zinc finger protein 622-like | ||||
Swissprot | Q8H1G5 | 1e-134 | REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 | ||||
TrEMBL | A0A0D2QAI1 | 0.0 | A0A0D2QAI1_G | ||||
STRING | GLYMA17G29490.1 | 1e-143 | (Glycine max) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G068400.3 |
Publications ? help Back to Top | |||
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